Simple sequence repeats marker polymorphism in emmer wheat (<Emphasis Type="Italic">Triticum dicoccon</Emphasis> Schrank): Analysis of genetic diversity and differentiation

Genetic diversity was investigated in 73 accessions of emmer wheat (Triticum dicoccon Schrank) from 11 geographical regions using a set of 29 simple-sequence repeat (SSR or microsatellite) markers, representing at least two markers for each chromosome. The SSR primers amplified a total of 357 different alleles with an average of 12.31 alleles per locus. The number of fragments detected by each primer ranged between 6 (Xgwm1066) and 21 (Xgwm268). Null alleles were detected in nine of the 29 primers used. A high level of gene diversity index was observed. Across the 29 primers, gene diversity ranged from 0.60 (Xgwm46) to 0.94 (Xgwm655), with a mean of 0.82. There was a highly significant correlation (r=0.882; p<0.01) between gene diversity index and the number of loci, showing the number of loci per se is a strong indicator of diversity. Analysis of genetic diversity within and among eleven geographical regions revealed most of the genetic diversity of the total sample resided within regions. The coefficient of gene differentiation (Gst = 0.27) showed that the genetic variation within and among the 11 geographical regions was 73 and 27%, respectively. High value of mean number of alleles per locus was found in Iran (4.86) followed by Morocco (4.10) and Armenia (4.03). On the contrary, lower mean number of alleles per locus was detected in Yemen (2.83). The average gene diversity index across regions ranged from 0.52 (Slovakia) to 0.67 (Morocco) with an average of 0.60. Multivariate techniques of principal component analysis and clustering were employed to examine genetic relationship among the 73 emmer wheat accessions vis-à-vis geographical regions of collections. The genetic distance coefficients for all possible 55 pairs of regional comparisons ranged from 0.63 (between Iran and Armenia, Georgia and Azerbaijan, Georgia and Slovakia) to 0.97 (between Morocco and Yemen, Spain and Georgia, and Turkey and Iran) with a mean of 0.82. From the PCA results, a two dimensional plot of PC1 versus PC2 was constructed. The scatter plot of the first two principal components which explained altogether 27% of the total variation depicted the presence of a clear pattern of geographical differentiation except in few cases like accessions from Caucasian region. Similar pattern of genetic relationships among accessions was observed in cluster analysis. The study provided genetic information of emmer wheat in relation to geographical regions of origin. The information could be utilized in crop improvement, germplasm conservation programs, and in further investigation.     

Influence of land use in small karst watersheds on the chemical status of peloid sediments on the eastern Adriatic coast

Background, Aim and Scope  

Most of the cathment areas supplying water and mineral matter to the Adriatic bays with healing mud/peloids are affected by various degrees of human impact, i.e. activity that is introducing various types of contaminants to environment. The bays represent shallow marine depositional environments where organic-rich sediments accumulate. Investigations for balneological characterization of several localities along the Croatian coast have shown that these organic-rich sediments may be classified as healing mud, i.e. peloids. Healing mud due to its balneologic features is in treatment of various diseases and in improvement of the overall health conditions and general well-being. Various components of mud, particularly trace elements, could be absorbed through dermal contact. Therefore, the study of the abundance of such potentially toxic elements as As, Pb, Hg, Cd, Se, Sb, Cu, Zn in marine sediments used as healing mud is necessary in order to know their mobility and to avoid possible intoxications.     

Effect of long-term manuring and fertilizers on carbon pools,soil structure,and sustainability under different cropping systems in wet-temperate zone of northwest Himalayas

We investigated C management index (CMI; an indicator of sustainability of a management system and is based on total and labile C) and soil aggregation in medium-textured soils (silt loam and silty clay loam) under different cropping systems as follows: maize-wheat (M-W), rice-wheat (R-W), soybean-wheat (S-W), Guinea grass, and Setaria grass. Field experiments were 6–32 years long and were located in the wet-temperate zone of northwest Himalayas. The plant nutrients were applied through chemical fertilizers (urea, superphosphate, and muriate of potash) with or without organic materials (FYM, wheat straw, and Lantana spp.). The content of total C (C_T), labile C (C_L), CMI, mean weight diameter (MWD), and aggregate porosity varied significantly under different cropping systems. The range was 1.59 (R-W)–4.29% (Setaria) for C_T, 1.23 (R-W)–3.89 mg/kg (Guinea grass) for C_L, 52.09 (R-W)–129.77 (Guinea grass) for CMI, 0.90 (R-W)–5.09 (Guinea grass) for MWD, and 41.5 (R-W)–56.8% (S-W) for aggregate porosity. Aggregate porosity was highest (56.8%) under S-W, followed by grasses (50.1–51.2%), and M/R-W (41.5–50.0%). As per these data, (a) continuous use of N alone as urea lowered soil sustainability over control (no fertilizers); (b) use of NPK at recommended rates improved soil productivity over control; (c) the NPK + organic amendments further improved soil sustainability; and (d) the sustainability under different cropping systems followed the order: perennial grasses > soybean-wheat > maize-wheat > rice-wheat.     

Spatial and vertical distribution of <Superscript>137</Superscript>Cs in soils in the erosive area of southeastern Serbia (Pčinja and South Morava River Basins)

Purpose

The area of southeastern Serbia, the P?inja and South Morava River Basins, is under the influence of very strong erosion, and the aim of this study was to investigate the vertical and spatial distribution of the ¹³⁷Cs in the eroded soils of this area.

Materials and methods

Vertical soil profiles were collected with 5-cm increments from the uppermost layer down to 20, 25, 30, 40, and 50 cm of depth, depending on the thickness of the soil layers, i.e., down to the underlying parent rocks. Measurements of ¹³⁷Cs activity concentration were performed by using the HPGe gamma-ray spectrometer ORTEC-AMETEK (34 % relative efficiency and high resolution 1.65 keV at 1.33 MeV for ⁶⁰Co), from its gamma-ray line at 661.2 keV.

Results and discussion

The mean ¹³⁷Cs activity concentration across all 18 soil profiles (for all soil layers) was found to be 20 Bq kg^?1. In the greatest number of soil profiles, the ¹³⁷Cs activity concentration was generally highest in the first soil layer (0–5 cm) and decreased with soil depth, while in a few soil profiles, the peak of either the ¹³⁷Cs activity concentration occurred in the second soil layer (5–10 cm) or the ¹³⁷Cs activity concentration was almost equal throughout the entire soil profile. The mean ¹³⁷Cs activity concentration in the first soil layer (0–5 cm) was found to be 61 Bq kg^?1, and the high coefficient of variation of 92 % pointed out high spatial variability and large range of the ¹³⁷Cs activity concentrations in the study area.

Conclusions

The obtained results indicate that in the greatest number of soil profiles, ¹³⁷Cs is present in the upper layers, with concentration decreasing with depth, as is typical in uncultivated soil. Its spatial distribution was very uneven among the surface soil layers of the investigated sites. One of the main reasons for such pattern of ¹³⁷Cs in the study area may be soil erosion. Additional investigations which would support this hypothesis are required.

     

Variability of the quality and quantity of organic matter in soil affected by multiple wildfires

Purpose

Fire in mountainous areas can lead to increased variability of their soil organic matter (SOM) due to spatial inhomogeneity and pre-fire fuel distribution. Here, we elucidated if this was the case in our study area and how this affected the reliability of solid-state ¹³C NMR spectroscopy applied for the study of the medium-term impact of fire on SOM

Materials and methods

The study occurred in the Sierra de Aznalcóllar, Southern Spain, which experienced their last intense fire 7 years before sampling. In a first approach (method 1), the corners and the center of a randomly chosen square with a side length of 15 m were sampled and analyzed separately. For comparison, composite samples (method 2) were obtained from three soils. We characterized material from unburnt, burnt, and double burnt regions. Data describing the physical and chemical properties of the soils together with the NMR spectroscopic characterization were analyzed using ANOVA.

Results and discussion

Both sampling methods yielded comparable results with comparable standard errors. No major differences between the fire-affected and unburnt soils were observed with respect to physical and chemical properties and C and N contents, but solid-state ¹³C NMR spectroscopy indicated a small but significant elevation of aromaticity in the soils with fire history.

Conclusions

The analysis showed that sampling with reduced replicates (method 1) can still lead to representative NMR data. The more complex sampling of comparing three composite samples (method 2) did not decrease the standard error. Our results also indicate that in the study area typical properties of the soil and its SOM induced by former burnings will not persist beyond a few decades.

     

Clay amendment to sandy soil—effect of clay concentration and ped size on nutrient dynamics after residue addition

Purpose

Crop growth on sandy soils can be increased by claying. In modified sandy soils, the added clay is in the form of peds ranging in size from millimetres to centimetres creating a highly non-uniform matrix where ped size could influence nutrient availability and organic C binding. The aim of the study was to determine the effect of clay addition rate and ped size in residue amended sandy soil on soil respiration, nutrient availability and organic C retention.

Materials and methods

In this study, clay peds of 1, 2 or 3 mm size derived from a clay-rich Vertosol (73 % clay) were added to a sandy soil (3 % clay) at clay addition rates of 10 and 20 % w/w. After the addition of ground faba bean residue (C/N 37) at 10 g kg^?1, the soils were incubated for 45 days at 80 % of water-holding capacity.

Results and discussion

Clay addition had no consistent effect on cumulative respiration, but reduced NH₄ ⁺ availability with a greater reduction at 20 % compared to 10 % clay and with 1 and 2 mm compared to 3 mm peds. Sandy soil with clay peds had a greater maximum NH₄ ⁺ and P sorption capacity than sandy soil alone, and sorption capacity was higher at 20 % compared to 10 % clay addition and greater with 1 mm compared to 3 mm peds. Retrieval of clay peds at the end of the experiment showed ped breakdown during the experiment but also the formation of larger peds. Compared to the <53 μm fraction added at the start of the experiment, the total organic carbon (TOC) content of the <53 μm fraction was increased up to nearly two fold, particularly in the smaller peds (1 and 2 mm).

Conclusions

When sandy soils are amended with clay, N availability and organic C binding depend on both clay addition rate and ped size.

     

Amendment of sulfate with Se into soils further reduces methylmercury accumulation in rice

Purpose

Both selenium (Se) and sulfate could largely affect methylmercury (MeHg) dynamics and phytoavailability in soil-rice systems, while their combined effects are less understood. Here, we aimed at exploring the potential effects of sulfate on MeHg accumulation in rice in the presence of Se.

Materials and methods

Rice was cultivated in inorganic Hg-spiked soils amended with Se only (selenite/selenate, “Se treatments”) or Se and sulfate (“Se?+?Sulfate treatments”). Soil parameters (e.g., pH and redox potential (Eh)), MeHg concentrations in soils, as well as MeHg or Se accumulation in rice plants were quantified during the rice growth period.

Results and discussion

Soil MeHg concentrations were generally comparable between Se?+?Sulfate and Se treatments. However, MeHg uptake by rice plants in Se?+?Sulfate treatments was 9–31 % lower than those in Se treatments, possibly due to the increased soil pH and formation of iron sulfides, which may reduce MeHg phytoavailability under sulfate amendment. Furthermore, sulfate input enhanced Se accumulation in root (especially in the presence of selenate), which could be responsible for the increased MeHg distribution in root and thus lower MeHg distribution in grain. Consequently, the reduced plant uptake of MeHg together with the decreased MeHg distribution in grain resulted in decline of grain MeHg concentrations in Se?+?Sulfate treatments (8–31 % lower compared to Se treatments).

Conclusions

Our results suggest that sulfate input with Se could further reduce MeHg accumulation in rice, which improved mechanistic understanding of MeHg behaviors in soil-rice systems.

     

Cadmium contamination of sediments in the water reservoirs in Silesian Upland (southern Poland)

Purpose

Cadmium (Cd) is considered a toxic element and its concentrations are relevant to human health and the environment. Therefore, the purpose of the study was to determine the extent to which the bottom sediments of water bodies (artificial lakes and ponds) in the Silesian Upland in southern Poland are contaminated with Cd; an attempt was also made to determine the factors that condition spatial differences in the concentration of this element between individual water bodies in the region.

Materials and methods

Measurements of the Cd content in bottom sediments were carried out in 35 water bodies in southern Poland in 2011 and 2012. Depending on the surface area and morphometric characteristics, from two to nine samples representative in terms of sediment thickness were collected in each water body. Cadmium concentrations were determined for 92 0.25 g aliquots using the TD-ICP method.

Results and discussion

Cadmium content in all samples (0.7–580.0 mg kg^?1) was higher than the natural range of concentrations for this element in the Earth’s crust (0.1–0.3 mg kg^?1) and the geochemical background for Poland (0.5 mg kg^?1) and, with a few exceptions, was also higher than the preindustrial concentration (1.0 mg kg^?1) and the regional geochemical background (2.5 mg kg^?1). Adopting natural Cd concentrations in the Earth’s crust (0.1–0.3 mg kg^?1) as the baseline for the geoaccumulation index (I_geo), the sediments examined can be classified as extremely and heavily contaminated (and moderately contaminated in a small number of cases). The assessment of sediment quality based on I_geo, with the regional geochemical background (2.5 mg kg^?1) adopted as the baseline, results in non-contaminated and moderately contaminated sediments being dominant with a far smaller number of heavily and extremely contaminated ones.

Conclusions

In the case of several water bodies, Cd concentrations were at record levels that have not been found anywhere else in the world. On the basis of the I_geo, sediments of varying quality were found—from virtually uncontaminated to extremely contaminated. The I_geo index as an indicator of the quality of bottom sediments is a measure that requires careful interpretation, especially when different concentration levels regarded as natural are used for determining its value.

     

Maintaining Genetic Resources of Peach Palm (<Emphasis Type="Italic">Bactris gasipaes</Emphasis> Kunth): The Role of Seed Migration and Swidden-fallow Management in Northeastern Peru

Knowledge of the effects of farmer practices on population genetic parameters of peach palm (Bactris gasipaes Kunth) is relevant to the improvement and conservation of the palm’s genetic resources. Microsatellite markers were used to assess genetic diversity and population structure of peach palm in swidden-fallow agroforestry systems in northeastern Peru. The study covered eight communities, comprising two study areas 160 km apart – one occupied by indigenous Amerindians and the other by mixed race campesinos. Simultaneous analysis of an ex situ peach palm germplasm collection provided a means to compare population genetic parameters. Farmers who were surveyed on seed selection practices for peach palm reported that an average of only four palms (4.3 for campesino and 1.5 for indigenous populations) were used to provide seed for the establishment of the forest gardens sampled. As expected, inbreeding coefficients observed within communities were relatively high (f = 0.105 − 0.210), however, observed heterozygosities within communities were also high (0.625–0.741). A metapopulation approach was used to describe migration within and among regions, implying a hierarchical structure of gene flow which maintains relatively high levels of genetic diversity. Seed migration was found to occur over longer distances (≤600 km) and at a higher frequency (46% of palms sampled) in the indigenous study area, and a proportionally greater number of alleles was found (49 vs. 43 over three loci) with twice as many private alleles occurring only in the indigenous populations. The farmers’ practice of preserving remnant palms through successive swidden generations may have contributed to the maintenance of alleles by reducing the severity of founder effects. Although the campesino study area exhibited a significant (20% of the variation; p < 0.01) isolation-by-distance relationship across 35 km distance, in general, both study populations had relatively limited genetic structure (θ = 0.012–0.03), which is believed to have resulted from the exchange of seeds over long distances and periods of time.